Wakayama
Amortized Bayesian inference for actigraph time sheet data from mobile devices
Zhou, Daniel, Banerjee, Sudipto
Mobile data technologies use ``actigraphs'' to furnish information on health variables as a function of a subject's movement. The advent of wearable devices and related technologies has propelled the creation of health databases consisting of human movement data to conduct research on mobility patterns and health outcomes. Statistical methods for analyzing high-resolution actigraph data depend on the specific inferential context, but the advent of Artificial Intelligence (AI) frameworks require that the methods be congruent to transfer learning and amortization. This article devises amortized Bayesian inference for actigraph time sheets. We pursue a Bayesian approach to ensure full propagation of uncertainty and its quantification using a hierarchical dynamic linear model. We build our analysis around actigraph data from the Physical Activity through Sustainable Transport Approaches in Los Angeles (PASTA-LA) study conducted by the Fielding School of Public Health in the University of California, Los Angeles. Apart from achieving probabilistic imputation of actigraph time sheets, we are also able to statistically learn about the time-varying impact of explanatory variables on the magnitude of acceleration (MAG) for a cohort of subjects.
On Prior Distributions for Orthogonal Function Sequences
Sugasawa, Shonosuke, Mochihashi, Daichi
We propose a novel class of prior distributions for sequences of orthogonal functions, which are frequently required in various statistical models such as functional principal component analysis (FPCA). Our approach constructs priors sequentially by imposing adaptive orthogonality constraints through a hierarchical formulation of conditionally normal distributions. The orthogonality is controlled via hyperparameters, allowing for flexible trade-offs between exactness and smoothness, which can be learned from the observed data. We illustrate the properties of the proposed prior and show that it leads to nearly orthogonal posterior estimates. The proposed prior is employed in Bayesian FPCA, providing more interpretable principal functions and efficient low-rank representations. Through simulation studies and analysis of human mobility data in Tokyo, we demonstrate the superior performance of our approach in inducing orthogonality and improving functional component estimation.
CNN-based Surface Temperature Forecasts with Ensemble Numerical Weather Prediction over Medium-range Forecast Periods
Inoue, Takuya, Kawabata, Takuya
This study proposes a method that integrates convolutional neural networks (CNNs) with ensemble numerical weather prediction (NWP) models, enabling surface temperature forecasting at lead times beyond the short-range (five-day) forecast period. Owing to limited computational resources, operational medium-range temperature forecasts typically rely on low-resolution NWP models, which are prone to systematic and random errors. To resolve these limitations, the proposed method first reduces systematic errors through CNN-based post-processing (bias correction and spatial super-resolution) on each ensemble member, reconstructing high-resolution temperature fields from low-resolution model outputs. Second, it reduces random errors through ensemble averaging of the CNN-corrected members. This study also investigates whether the sequence of CNN correction and ensemble averaging affects the forecast accuracy. For comparison with the proposed method, we additionally conducted experiments with the CNN trained on ensemble-averaged forecasts. The first approach--CNN correction before ensemble averaging--consistently achieved higher accuracy than the reverse approach. Although based on low-resolution ensemble forecasts, the proposed method notably outperformed the high-resolution deterministic NWP models. These findings indicate that combining CNN-based correction with ensemble averaging effectively reduces both the systematic and random errors in NWP model outputs. The proposed approach is a practical and scalable solution for improving medium-range temperature forecasts, and is particularly valuable at operational centers with limited computational resources.
Super-fast rates of convergence for Neural Networks Classifiers under the Hard Margin Condition
Tepakbong, Nathanael, Zhou, Ding-Xuan, Zhou, Xiang
We study the classical binary classification problem for hypothesis spaces of Deep Neural Networks (DNNs) with ReLU activation under Tsybakov's low-noise condition with exponent $q>0$, and its limit-case $q\to\infty$ which we refer to as the "hard-margin condition". We show that DNNs which minimize the empirical risk with square loss surrogate and $\ell_p$ penalty can achieve finite-sample excess risk bounds of order $\mathcal{O}\left(n^{-α}\right)$ for arbitrarily large $α>0$ under the hard-margin condition, provided that the regression function $η$ is sufficiently smooth. The proof relies on a novel decomposition of the excess risk which might be of independent interest.
Causal rule ensemble approach for multi-arm data
Wan, Ke, Tanioka, Kensuke, Shimokawa, Toshio
Heterogeneous treatment effect (HTE) estimation is critical in medical research. It provides insights into how treatment effects vary among individuals, which can provide statistical evidence for precision medicine. While most existing methods focus on binary treatment situations, real-world applications often involve multiple interventions. However, current HTE estimation methods are primarily designed for binary comparisons and often rely on black-box models, which limit their applicability and interpretability in multi-arm settings. To address these challenges, we propose an interpretable machine learning framework for HTE estimation in multi-arm trials. Our method employs a rule-based ensemble approach consisting of rule generation, rule ensemble, and HTE estimation, ensuring both predictive accuracy and interpretability. Through extensive simulation studies and real data applications, the performance of our method was evaluated against state-of-the-art multi-arm HTE estimation approaches. The results indicate that our approach achieved lower bias and higher estimation accuracy compared with those of existing methods. Furthermore, the interpretability of our framework allows clearer insights into how covariates influence treatment effects, facilitating clinical decision making. By bridging the gap between accuracy and interpretability, our study contributes a valuable tool for multi-arm HTE estimation, supporting precision medicine.
Physics-Constrained Generative Artificial Intelligence for Rapid Takeoff Trajectory Design
To aid urban air mobility (UAM), electric vertical takeoff and landing (eVTOL) aircraft are being targeted. Conventional multidisciplinary analysis and optimization (MDAO) can be expensive, while surrogate-based optimization can struggle with challenging physical constraints. This work proposes physics-constrained generative adversarial networks (physicsGAN), to intelligently parameterize the takeoff control profiles of an eVTOL aircraft and to transform the original design space to a feasible space. Specifically, the transformed feasible space refers to a space where all designs directly satisfy all design constraints. The physicsGAN-enabled surrogate-based takeoff trajectory design framework was demonstrated on the Airbus A3 Vahana. The physicsGAN generated only feasible control profiles of power and wing angle in the feasible space with around 98.9% of designs satisfying all constraints. The proposed design framework obtained 99.6% accuracy compared with simulation-based optimal design and took only 2.2 seconds, which reduced the computational time by around 200 times. Meanwhile, data-driven GAN-enabled surrogate-based optimization took 21.9 seconds using a derivative-free optimizer, which was around an order of magnitude slower than the proposed framework. Moreover, the data-driven GAN-based optimization using gradient-based optimizers could not consistently find the optimal design during random trials and got stuck in an infeasible region, which is problematic in real practice. Therefore, the proposed physicsGAN-based design framework outperformed data-driven GAN-based design to the extent of efficiency (2.2 seconds), optimality (99.6% accurate), and feasibility (100% feasible). According to the literature review, this is the first physics-constrained generative artificial intelligence enabled by surrogate models.
Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners
Rasul, Hezha O., Ghafour, Dlzar D., Aziz, Bakhtyar K., Hassan, Bryar A., Rashid, Tarik A., Kivrak, Arif
The drug development process is a critical challenge in the pharmaceutical industry due to its time-consuming nature and the need to discover new drug potentials to address various ailments. The initial step in drug development, drug target identification, often consumes considerable time. While valid, traditional methods such as in vivo and in vitro approaches are limited in their ability to analyze vast amounts of data efficiently, leading to wasteful outcomes. To expedite and streamline drug development, an increasing reliance on computer-aided drug design (CADD) approaches has merged. These sophisticated in silico methods offer a promising avenue for efficiently identifying viable drug candidates, thus providing pharmaceutical firms with significant opportunities to uncover new prospective drug targets. The main goal of this work is to review in silico methods used in the drug development process with a focus on identifying therapeutic targets linked to specific diseases at the genetic or protein level. This article thoroughly discusses A-to-Z in silico techniques, which are essential for identifying the targets of bioactive compounds and their potential therapeutic effects. This review intends to improve drug discovery processes by illuminating the state of these cutting-edge approaches, thereby maximizing the effectiveness and duration of clinical trials for novel drug target investigation.
Bayesian Inference in Recurrent Explicit Duration Switching Linear Dynamical Systems
Słupiński, Mikołaj, Lipiński, Piotr
In this paper, we propose a novel model called Recurrent Explicit Duration Switching Linear Dynamical Systems (REDSLDS) that incorporates recurrent explicit duration variables into the rSLDS model. We also propose an inference and learning scheme that involves the use of P\'olya-gamma augmentation. We demonstrate the improved segmentation capabilities of our model on three benchmark datasets, including two quantitative datasets and one qualitative dataset.
The Recurrent Sticky Hierarchical Dirichlet Process Hidden Markov Model
Słupiński, Mikołaj, Lipiński, Piotr
The Hierarchical Dirichlet Process Hidden Markov Model (HDP-HMM) is a natural Bayesian nonparametric extension of the classical Hidden Markov Model for learning from (spatio-)temporal data. A sticky HDP-HMM has been proposed to strengthen the self-persistence probability in the HDP-HMM. Then, disentangled sticky HDP-HMM has been proposed to disentangle the strength of the self-persistence prior and transition prior. However, the sticky HDP-HMM assumes that the self-persistence probability is stationary, limiting its expressiveness. Here, we build on previous work on sticky HDP-HMM and disentangled sticky HDP-HMM, developing a more general model: the recurrent sticky HDP-HMM (RS-HDP-HMM). We develop a novel Gibbs sampling strategy for efficient inference in this model. We show that RS-HDP-HMM outperforms disentangled sticky HDP-HMM, sticky HDP-HMM, and HDP-HMM in both synthetic and real data segmentation.
Resource Governance in Networked Systems via Integrated Variational Autoencoders and Reinforcement Learning
We introduce a framework that integrates variational autoencoders (VAE) with reinforcement learning (RL) to balance system performance and resource usage in multi-agent systems by dynamically adjusting network structures over time. A key innovation of this method is its capability to handle the vast action space of the network structure. This is achieved by combining Variational Auto-Encoder and Deep Reinforcement Learning to control the latent space encoded from the network structures. The proposed method, evaluated on the modified OpenAI particle environment under various scenarios, not only demonstrates superior performance compared to baselines but also reveals interesting strategies and insights through the learned behaviors.